Mir-17-P4c

MirGeneDB ID

Mmu-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-20b

Paralogues

Mmu-Mir-17-P1a Mmu-Mir-17-P1c Mmu-Mir-17-P1d Mmu-Mir-17-P2a Mmu-Mir-17-P2c Mmu-Mir-17-P4a Mmu-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chrX: 52742121-52742181 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGAAGAACAAGCUCGGAUCCUAGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGUUUUUAUACCACUCUACUGCAGUGUGAGCACUUCUAGUACUCCUGGAUCAACCAAGGUCUUGUUGAAG

Get precursor sequence

Structure

        10           20        30         40        50          
UAGAAGAACAAGCUCGG---|   U  U     CA-           G     G   UUUUUA 
                    AUCC AG AGUGC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGAGUGU ACGUC AUC      U
GAAGUUGUUCUGGAACCAAC^   -  C     AUC           G     -   UCACCA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

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Mature sequence

Mmu-Mir-17-P4c_5p

mirBase accession

MIMAT0003187

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0003187
TargetScanVert: mmu-miR-20b-5p
miRDB: MIMAT0003187

Star sequence

Mmu-Mir-17-P4c_3p*

mirBase accession

MIMAT0004788

Sequence

38- ACUGCAGUGUGAGCACUUCUAGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004788
TargetScanVert: mmu-miR-20b-3p
miRDB: MIMAT0004788