MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P4c3

Family name MIR-17 (all species)
Seed AAAGUGC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-20
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xtr-Mir-17-P4c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c3)		 Mir-92-P2c3 NC_030738.1: 47238172-47238237 [-] UCSC Ensembl
Mir-92-P1c3 NC_030738.1: 47238303-47238364 [-] UCSC Ensembl
Mir-19-P2c3 NC_030738.1: 47238435-47238491 [-] UCSC Ensembl
Mir-17-P4c3 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Mir-17-P2c3 NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Mir-17-P1c3 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGAUUGACAAUUGCUGUCAAAGCAGUUCCAAAGUGCUCAUAGUGCAGGUAGUUGUAUUCAUGUUCUACUGUAAUAUGGGCACUUACAGUACUGCUGGAUAAUAUGCAUCGUCACGCUUG
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Structure
        10           20        30         40        50          
UUGGAUUGACAAUUGCU---|  AA      UCCA-           G     G   UUGUAU 
                    GUC  AGCAGU     AAGUGCUCAUA UGCAG UAG      \
                    UAG  UCGUCA     UUCACGGGUAU AUGUC AUC      U
GUUCGCACUGCUACGUAUAA^  G-      UGACA           A     -   UUGUAC 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P4c3_5p
mirBase accessionMIMAT0001348
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Xla-Mir-17-P4c3_3p*
mirBase accessionNone
Sequence 
38- ACUGUAAUAUGGGCACUUACAGU -61
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