MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P4d3

Family name MIR-17 (all species)
Seed AAAGUGC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-93
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d4 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xtr-Mir-17-P4d 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 136153621-136153681 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUUCCAUCAGACACUGUCCUAUGGGCUCCAAAGUGCUGUUCGUGCAGGUAGCUUUAUAACAGACCUACUGCAUGAGCAGCACUUCCUGAGCUCAAUGUGACCCUUCACGUCGGACCCGC
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Structure
        10         20         30         40        50          
CAAUUCCAUCAGACACU-   C  -       CA-|                G   CUUUAU 
                  GUC UA UGGGCUC   AAGUGCUGUUCGUGCAG UAG      \
                  CAG GU ACUCGAG   UUCACGACGAGUACGUC AUC      A
CGCCCAGGCUGCACUUCC   U  A       UCC^                -   CAGACA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P4d3_5p
mirBase accessionMIMAT0046613
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Xla-Mir-17-P4d3_3p*
mirBase accessionMIMAT0046614
Sequence 
38- ACUGCAUGAGCAGCACUUCCUGA -61
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