| MirGeneDB ID | Pab-Mir-17-P4d |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAAGUGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-17-P1a Pab-Mir-17-P1c Pab-Mir-17-P1d Pab-Mir-17-P2a Pab-Mir-17-P2c Pab-Mir-17-P4a Pab-Mir-17-P4c |
| Orthologues | Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 9846398-9846459 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCCGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCCGUCUUGGACCUCA-- CA- -| U G UGUGAU GUCCUGGGGGCUC AAGUGCU GUUCG GCAG UAG U CAGGGCCCCCGAG UUCACGA CGAGU CGUC AUC A GUUAACCGUCUCUCUUGCA CCC U^ - - CAGCCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Mature sequence | Pab-Mir-17-P4d_5p |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
|
| Star sequence | Pab-Mir-17-P4d_3p* |
| mirBase accession | None |
| Sequence |
39- ACUGCUGAGCUAGCACUUCCCGA -62
Get sequence
|
