Mir-17-P4d

MirGeneDB ID

Pab-Mir-17-P4d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-17-P1a Pab-Mir-17-P1c Pab-Mir-17-P1d Pab-Mir-17-P2a Pab-Mir-17-P2c Pab-Mir-17-P4a Pab-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054685.2: 9846398-9846459 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUG

Get precursor sequence

Structure

        10          20        30          40        50        60
UCCCGUCUUGGACCUCA--             CA-       -|    U    G   UGUGAU 
                   GUCCUGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGCCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUAACCGUCUCUCUUGCA             CCC       U^    -    -   CAGCCC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-17-P4d_5p

mirBase accession

None

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

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Star sequence

Pab-Mir-17-P4d_3p*

mirBase accession

None

Sequence

39- ACUGCUGAGCUAGCACUUCCCGA -62

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