MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-17-P1a  Pab-Mir-17-P1c  Pab-Mir-17-P1d  Pab-Mir-17-P2a  Pab-Mir-17-P2c  Pab-Mir-17-P4a  Pab-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 140167200-140167260 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGAGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUAUGGGCACUUCCAGUACUCUUGGAUAACAAAUCUCUUGUUGAUGG
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Structure
        10           20        30         40        50          
ACAGAGGAUAAGAUUGG---|   U  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUAU AUGUC AUC      C
GGUAGUUGUUCUCUAAACAA^   U  -     ACC           G     -   UCAGUA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Pab-Mir-17-P4c_3p*
mirBase accessionNone
Sequence 
38- ACUGUAGUAUGGGCACUUCCAGU -61
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