MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01013767.1: 4955-5015 [+]
Precursor
(pre-Mir +30nt flank)
UAUGUAUCUAUCUAGAUGUCCAGGCAGCACCAAAGUGCUCAUAGUGCAGGUAGUAGUGAACAAAAUCUACUGUAAUAUGAGCACUUAUAGUCAUGCUCGACAAAUCACAAUAAAAAGCCAA
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Structure
        10           20        30         40        50          
UAUGUAUCUAUCUAGAU---|  CA    GC  CA-           G     G   UAGUGA 
                    GUC  GGCA  AC   AAGUGCUCAUA UGCAG UAG      \
                    CAG  UCGU  UG   UUCACGAGUAU AUGUC AUC      A
AACCGAAAAAUAACACUAAA^  C-    AC  AUA           A     -   UAAAAC 
 .       110       100         90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P4c_5p (predicted)
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Sto-Mir-17-P4c_3p* (predicted)
mirBase accessionNone
Sequence 
38- ACUGUAAUAUGAGCACUUAUAGU -61
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