MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mal-Mir-17-P1d  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mal-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884715.1: 1056119-1056176 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUGACUCCUCGGCUGAACUUGCAGUUCCAAAGUGCUCACAGUGCAGGUAGUACACACAGAUCUACUGCAGUUUGUGCACUCGGGUAUUGCUGCUCGCCUUCCCCCUUGUGUCAGA
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Structure
        10           20        30        40        50         
UUUCUGACUCCUCGGCU---| ACUU     U  AA     U  CAG     G   UACAC 
                    GA    GCAGU CC  AGUGC CA   UGCAG UAG     \
                    CU    CGUUA GG  UCACG GU   ACGUC AUC     A
AGACUGUGUUCCCCCUUCCG^ CGU-     U  GC     U  UUG     -   UAGAC 
      110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCACAGUGCAGGUAG -23
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Star sequence

Mal-Mir-17-P4c_3p* (predicted)
mirBase accessionNone
Sequence 
36- ACUGCAGUUUGUGCACUCGGGU -58
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