MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-20b
Paralogues Cli-Mir-17-P1a  Cli-Mir-17-P1c  Cli-Mir-17-P2a  Cli-Mir-17-P2c  Cli-Mir-17-P4a 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold72: 3452115-3452175 [-]
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c scaffold72: 3451682-3451746 [-]
Mir-92-P1c scaffold72: 3451822-3451883 [-]
Mir-19-P2c scaffold72: 3451991-3452050 [-]
Mir-17-P4c scaffold72: 3452115-3452175 [-]
Mir-17-P2c scaffold72: 3452309-3452373 [-]
Mir-17-P1c scaffold72: 3452469-3452526 [-]
Precursor
(pre-Mir +30nt flank)
UCUCGGGAAGUAGUUUUGUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGCUUUGAAUUGAACCUACUGUAAUGUGGGCACUUAUAGUACUGCUAGAUAAAGUGCAUCCCAGCUAGUG
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Structure
        10        20          30         40        50          
UCUCGGGAAGUAGUUUUGUC--          CA-|          G     G   CUUUGA 
                      CUAGCAGUAU   AAGUGCUCAUA UGCAG UAG      \
                      GAUCGUCAUG   UUCACGGGUGU AUGUC AUC      A
GUGAUCGACCCUACGUGAAAUA          AUA^          A     -   CAAGUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-17-P4c_5p

mirBase accessionMIMAT0038434
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Cli-Mir-17-P4c_3p*

mirBase accessionMIMAT0038435
Sequence
38- ACUGUAAUGUGGGCACUUAUAGU -61
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