MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-20b
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold08698: 72088-72146 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c scaffold08698: 71694-71762 [-] UCSC Ensembl
Mir-17-P4c scaffold08698: 72088-72146 [-] UCSC Ensembl
Mir-17-P2c scaffold08698: 72457-72520 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUGCCAUGCAUGGUAGACCUGGCAGUCCCAAAGUGCUCACAGUGCAGAUAGUUUACACUCAUCUACUGCAGUCUGUGCACUUCAAGUAUUUCAGGUCGCCUUCUCACAUACUUGCAU
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Structure
        10           20        30        40          50         
UAGUGCCAUGCAUGGUA---|      CAGUCCCA      UC    --     A   UUUAC 
                    GACCUGG        AAGUGC  ACAG  UGCAG UAG     \
                    CUGGACU        UUCACG  UGUC  ACGUC AUC     A
UACGUUCAUACACUCUUCCG^      UUAUGAAC      --    UG     -   UACUC 
       110       100        90        80          70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P4c_5p

mirBase accessionMIMAT0044341
Sequence
0- CAAAGUGCUCACAGUGCAGAUAG -23
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Star sequence

Gmo-Mir-17-P4c_3p* (predicted)

mirBase accessionNone
Sequence
36- ACUGCAGUCUGUGCACUUCAAGU -59
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