MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-20a-3
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4c  Gmo-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)
Mir-92-P2d GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Mir-19-P2d GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Mir-17-P4d GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Mir-17-P1d GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGUCGUUCUAGUUCGGUGAAGUGUUUGCUAAAGUGCUUAUAGUGCAGGUAGUAUUGAUACCUGGCCUACCGCCCUGUAAGCACUUAUCUCAAACGCUGGCACGAUAGUCCUCUGUCUGAC
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Structure
        10         20         30         40        50        60
CUGGUCGUUCUAGUUCG-   A-        CUA-|           U  A     UAUUGA 
                  GUG  AGUGUUUG    AAGUGCUUAUAG GC GGUAG      U
                  CAC  UCGCAAAC    UUCACGAAUGUC CG CCAUC      A
CAGUCUGUCUCCUGAUAG   GG        UCUA^           C  -     CGGUCC 
120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P1d_5p

mirBase accessionMIMAT0044245
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Gmo-Mir-17-P1d_3p*

mirBase accessionMIMAT0044246
Sequence
40- CCGCCCUGUAAGCACUUAUCUC -62
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