Mir-17-P1d

MirGeneDB ID

Rno-Mir-17-P1d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-106b

Paralogues

Rno-Mir-17-P1a Rno-Mir-17-P1c Rno-Mir-17-P2a Rno-Mir-17-P2c Rno-Mir-17-P4a Rno-Mir-17-P4c Rno-Mir-17-P4d

Orthologues

Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Laf-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr12: 19307761-19307822 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1d)

Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCUUCCCUCCCACCAGCCCUGCUGGGACUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCUGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACAUGCAACACCCACGGAG

Get precursor sequence

Structure

        10          20         30        40        50          
CUUCUUCCCUCCCACCA--          -|ACUA       G       AGAUAGUGGUCC 
                   GCCCUGCUGG G    AAGUGCU ACAGUGC            \
                   CGGGACGACC C    UUCAUGG UGUCACG            U
GAGGCACCCACAACGUACA          U^GUCG       G       CCAUCGUGUCUC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts +1 and +2.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-17-P1d_5p

mirBase accession

MIMAT0000825

Sequence

0- UAAAGUGCUGACAGUGCAGAUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000825
TargetScanVert: rno-miR-106b-5p
miRDB: MIMAT0000825

Star sequence

Rno-Mir-17-P1d_3p*

mirBase accession

MIMAT0004727

Sequence

40- CCGCACUGUGGGUACUUGCUGC -62

Get sequence

Proposed targets

microrna.org: MIMAT0004727
TargetScanVert: rno-miR-106b-3p
miRDB: MIMAT0004727