MirGeneDB 2.1
MirGeneDB ID

Bta-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cow (Bos taurus)
MiRBase ID bta-mir-106b
Paralogues Bta-Mir-17-P1a  Bta-Mir-17-P1c  Bta-Mir-17-P2a  Bta-Mir-17-P2c  Bta-Mir-17-P4a  Bta-Mir-17-P4c  Bta-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037352.1: 36355574-36355633 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d NC_037352.1: 36355574-36355633 [+] UCSC Ensembl
Mir-17-P4d NC_037352.1: 36355776-36355837 [+] UCSC Ensembl
Mir-92-P2d NC_037352.1: 36355979-36356038 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUCCCUCCUGCUCUGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUGUGUGCUACCGCACUGUGGGUACUUGCUGCUCCGGCAGGGCACGCCCAGCGUCCCAGGAG
Get precursor sequence
Structure
        10          20        30         40        50         
GCCUCCCUCCUGCUCUG--             UA-|      G       AGAUAGUGGUC 
                   GCCCUGCCGGGGC   AAGUGCU ACAGUGC           \
                   CGGGACGGCCUCG   UUCAUGG UGUCACG           C
GAGGACCCUGCGACCCGCA             UCG^      G       CCAUCGUGUGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-17-P1d_5p
mirBase accessionMIMAT0009218
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
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Proposed targets TargetScanVert: bta-miR-106b
Star sequence

Bta-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
38- CCGCACUGUGGGUACUUGCUGC -60
Get sequence