MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-17-P1a  Lch-Mir-17-P1c  Lch-Mir-17-P2a  Lch-Mir-17-P2c  Lch-Mir-17-P4a  Lch-Mir-17-P4c  Lch-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128754.1: 148690-148752 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUAGCGACUCUCUGGGGCCUCCUAGUGCUAAAGUGCUUACAGUGCAGGUAGAAACUGUCACACCACCUACUGCAUUGUGGGCACUUUCUGCACUGGCUGGCCAGUCUUCAGCACGCAGCGG
Get precursor sequence
Structure
        10          20        30         40        50        60 
AGCUAGCGACUCUCUGG--    UC       U-|                 G   AAACUGU 
                   GGCC  CUAGUGC  AAAGUGCUUACAGUGCAG UAG       \
                   CCGG  GGUCACG  UUUCACGGGUGUUACGUC AUC       C
GGCGACGCACGACUUCUGA    UC       UC^                 -   CACCACA 
 120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-17-P1d_5p (predicted)

mirBase accessionNone
Sequence
0- UAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Star sequence

Lch-Mir-17-P1d_3p* (predicted)

mirBase accessionNone
Sequence
41- CUGCAUUGUGGGCACUUUCUGC -63
Get sequence