MirGeneDB ID | Pab-Mir-17-P1d |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-17-P1a
Pab-Mir-17-P1c
Pab-Mir-17-P2a
Pab-Mir-17-P2c
Pab-Mir-17-P4a
Pab-Mir-17-P4c
Pab-Mir-17-P4d
|
Orthologues |
Ami-Mir-17-P1d
Bta-Mir-17-P1d
Cfa-Mir-17-P1d
Cja-Mir-17-P1d
Cmi-Mir-17-P1d
Cpi-Mir-17-P1d
Cpo-Mir-17-P1d
Dno-Mir-17-P1d
Eca-Mir-17-P1d
Ete-Mir-17-P1d
Gmo-Mir-17-P1d
Hsa-Mir-17-P1d
Laf-Mir-17-P1d
Lch-Mir-17-P1d
Loc-Mir-17-P1d
Mal-Mir-17-P1d
Mml-Mir-17-P1d
Mmr-Mir-17-P1d
Mmu-Mir-17-P1d
Ocu-Mir-17-P1d
Rno-Mir-17-P1d
Sto-Mir-17-P1d
Tni-Mir-17-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 9846624-9846685 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCUCCCUCCCGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCUCCCUCCCGCUCCA-- C UA-| G AGAUAGUGGUCC
GCCCUGC GGGGC AAGUGCU ACAGUGC \
CGGGACG CCUCG UUCAUGG UGUCACG U
GAGGUGCCUGCGACACGCA A UCG^ G CCAUCGUGCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and +2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-17-P1d_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUGACAGUGCAGAU -21
Get sequence
|
Star sequence |
Pab-Mir-17-P1d_3p* |
mirBase accession | None |
Sequence |
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
|