MirGeneDB ID | Loc-Mir-17-P1d |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-17-P1a
Loc-Mir-17-P1c
Loc-Mir-17-P2a
Loc-Mir-17-P2c
Loc-Mir-17-P4a
Loc-Mir-17-P4c
Loc-Mir-17-P4d
|
Orthologues |
Ami-Mir-17-P1d
Bta-Mir-17-P1d
Cfa-Mir-17-P1d
Cja-Mir-17-P1d
Cmi-Mir-17-P1d
Cpi-Mir-17-P1d
Cpo-Mir-17-P1d
Dno-Mir-17-P1d
Eca-Mir-17-P1d
Ete-Mir-17-P1d
Gmo-Mir-17-P1d
Hsa-Mir-17-P1d
Laf-Mir-17-P1d
Lch-Mir-17-P1d
Mal-Mir-17-P1d
Mml-Mir-17-P1d
Mmr-Mir-17-P1d
Mmu-Mir-17-P1d
Ocu-Mir-17-P1d
Pab-Mir-17-P1d
Rno-Mir-17-P1d
Sto-Mir-17-P1d
Tni-Mir-17-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG2: 57218139-57218200 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGCGCUGGCCUGAGGGGUCCUCGCUGUGCUAAAGUGCUUACAGUGCAGGUAGUUCCUCUGUUCAGCCUACCGCAGUGUGAGCACUUCUUGCACAGCAGGGCCAAGACGCAGGUUCGCGCGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAGCGCUGGCCUGAGGG---| C UA- G A UUCCUC
GUCCU GCUGUGC AAGUGCUUACA UGC GGUAG U
CGGGA CGACACG UUCACGAGUGU ACG CCAUC G
GGCGCGCUUGGACGCAGAAC^ - UUC G - CGACUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-17-P1d_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Loc-Mir-17-P1d_3p* |
mirBase accession | None |
Sequence |
40- CCGCAGUGUGAGCACUUCUUGC -62
Get sequence
|