MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1a  Loc-Mir-17-P1c  Loc-Mir-17-P1d  Loc-Mir-17-P2a  Loc-Mir-17-P4a  Loc-Mir-17-P4c  Loc-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG7: 45791034-45791098 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCGUCUGCCCCCUGGUGGACCUCGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAUUAGUUUAGAAUCUACUGCGCUAGAUGCUCCUUCUGGCAGGAGGUGCCACAGAACCGGCUGCAGUGCG
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Structure
        10         20         30          40        50        60 
CCCGCGUCUGCCCCCUG-    -     G     --|  U              U  UGAAUUA 
                  GUGG ACCUC UGUUA  AGG GCAUCUAGUGCAGU AG       G
                  CACC UGGAG ACGGU  UCC CGUAGAUCGCGUCA UC       U
GCGUGACGUCGGCCAAGA    G     G     CU^  U              -  UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Loc-Mir-17-P2c_3p*
mirBase accessionNone
Sequence 
40- UACUGCGCUAGAUGCUCCUUCUGGC -65
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