MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-17-P1a  Sha-Mir-17-P1c  Sha-Mir-17-P2a  Sha-Mir-17-P4a  Sha-Mir-17-P4c  Sha-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL867596.1: 71448-71512 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCUCGAUCCAUCAACUGUCCCUUGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGCUUAGUAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCCGCCUCCUAGACGACCUGGCCAGC
Get precursor sequence
Structure
        10          20        30          40        50        60 
CCGCCUCGAUCCAUCAACU--  CC         --|  U    C   U     U  UGAUGUA 
                     GU  CUUGUGCUA  AGG GCAU UAG GCAGU AG       G
                     CG  GAACACGGU  UCC CGUA AUC CGUCA UC       C
CGACCGGUCCAGCAGAUCCUC  CC         CU^  U    A   C     -  UAUGAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P2c_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
Star sequence

Sha-Mir-17-P2c_3p* (predicted)

mirBase accessionNone
Sequence
41- ACUGCCCUAAAUGCUCCUUCUGGC -65
Get sequence