MirGeneDB ID | Sha-Mir-17-P2a |
Family name |
MIR-17 (all species) |
Seed |
AAGGUGC |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
Sha-Mir-17-P1a
Sha-Mir-17-P1c
Sha-Mir-17-P2c
Sha-Mir-17-P4a
Sha-Mir-17-P4c
Sha-Mir-17-P4d
|
Orthologues |
Aca-Mir-17-P2a
Ami-Mir-17-P2a
Bta-Mir-17-P2a
Cfa-Mir-17-P2a
Cja-Mir-17-P2a
Cli-Mir-17-P2a
Cmi-Mir-17-P2a
Cpi-Mir-17-P2a
Cpo-Mir-17-P2a
Dno-Mir-17-P2a
Dre-Mir-17-P2a1
Dre-Mir-17-P2a2
Eca-Mir-17-P2a
Ete-Mir-17-P2a
Gga-Mir-17-P2a
Gja-Mir-17-P2a
Gmo-Mir-17-P2a1
Gmo-Mir-17-P2a2
Hsa-Mir-17-P2a
Laf-Mir-17-P2a
Lch-Mir-17-P2a
Loc-Mir-17-P2a
Mal-Mir-17-P2a2a
Mal-Mir-17-P2a2b
Mdo-Mir-17-P2a
Mml-Mir-17-P2a
Mmr-Mir-17-P2a
Mmu-Mir-17-P2a
Mun-Mir-17-P2a
Neu-Mir-17-P2a
Oan-Mir-17-P2a
Ocu-Mir-17-P2a
Pab-Mir-17-P2a
Pbv-Mir-17-P2a
Rno-Mir-17-P2a
Spt-Mir-17-P2a
Sto-Mir-17-P2a
Tgu-Mir-17-P2a
Tni-Mir-17-P2a1
Tni-Mir-17-P2a2
Xla-Mir-17-P2a3
Xla-Mir-17-P2a4
Xtr-Mir-17-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL849858.1: 3486975-3487039 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUAUGCUGGUGUCAAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAGUAAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGUUAUGCUGGUGUCAAGU-- U --| U UC U A UGAAGUA
GCUUUUUGU CUA AGG GCA UAG GCAG UAG G
UGAAGAAUA GGU UCC CGU AUC CGUC AUC A
CUUAAUGACCUACUUUUGUAU C CU^ U GA C - UACGAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-17-P2a_5p |
mirBase accession | None |
Sequence |
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
|
Star sequence |
Sha-Mir-17-P2a_3p* |
mirBase accession | None |
Sequence |
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
|