Mir-17-P2a1

MirGeneDB ID

Tni-Mir-17-P2a1

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-18

Paralogues

Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Tni-Mir-17-P1d Tni-Mir-17-P2a2 Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Tni-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Xtr-Mir-17-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

5: 8188734-8188798 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a1)

Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCUGUUUUUUUGAAGUUCCGUCUUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUGAAAUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGGGGCUGUGAUAUGCACCACCAGACC

Get precursor sequence

Structure

        10        20          30          40        50        60 
ACCUGUUUUUUUGAAGUUCCG--           --|  U   UC   U    A   UGAAAUA 
                       UCUUUGUGCUA  AGG GCA  UAG GCAG UAG       G
                       GGGAAUACGGU  UCC CGU  AUC CGUC AUC       A
CCAGACCACCACGUAUAGUGUCG           CU^  U   GA   C    -   CACGAUC 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-17-P2a1_5p

mirBase accession

MIMAT0002919

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Star sequence

Tni-Mir-17-P2a1_3p*

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence