MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-19-P1a1

Family name MIR-19 (all species)
Seed GUGCAAA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-19a
Paralogues Tni-Mir-19-P1a2  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Tni-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Xtr-Mir-19-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 8188599-8188656 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a1)
Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGGCCCAAAUAUCUUGCAGUUCUCUGCUAGUUUUGCAUAGUUGCACUACAAGAAUAGAGGAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUUGCUCUCCACCUGGUACG
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Structure
        10          20        30        40          50       
UUGGGCCCAAAUAUCUU--    UU U  GC             --|     U  AAGAA 
                   GCAG  C CU  UAGUUUUGCAUAG  UUGCAC AC     U
                   CGUC  G GG  GUCAAAACGUAUC  AACGUG UG     A
GCAUGGUCCACCUCUCGUU    CG U  UA             UA^     U  AGGAG 
      110       100        90        80        70        60
Deep sequencing
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CommentThere are Drosha cuts -1 and -3 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-19-P1a1_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Tni-Mir-19-P1a1_3p

mirBase accessionMIMAT0002921
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
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