Mir-19-P1a-v1

MirGeneDB ID

Cmi-Mir-19-P1a-v1

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-19-P1a-v2 Cmi-Mir-19-P1c Cmi-Mir-19-P2a Cmi-Mir-19-P2b Cmi-Mir-19-P2c Cmi-Mir-19-P2d

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Sto-Mir-19-P1a-v2 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635908.1: 307245-307302 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAAAUAAAAACAAAUUGCAGUUCUCUGCUAGUUUUGCAUGGUUGCACUACAAGAAGAAAUUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGGCUGGUUUGACUACUUCGUGAAGA

Get precursor sequence

Structure

        10          20        30        40          50       
CCAAAUAAAAACAAAUUG--      U  GC             --|     U  AAGAA 
                    CAGUUC CU  UAGUUUUGCAUGG  UUGCAC AC     G
                    GUCGGG GG  GUCAAAACGUAUC  AACGUG UG     A
AGAAGUGCUUCAUCAGUUUG      U  UA             UA^     U  AUUAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-19-P1a-v1_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCAUGGUUGCACUAC -21

Get sequence

Mature sequence

Cmi-Mir-19-P1a-v1_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

Get sequence