MirGeneDB ID | Cmi-Mir-19-P2a |
Family name |
MIR-19 (all species) |
Seed |
GUGCAAA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-19-P1a-v1
Cmi-Mir-19-P1a-v2
Cmi-Mir-19-P1c
Cmi-Mir-19-P2b
Cmi-Mir-19-P2c
Cmi-Mir-19-P2d
|
Orthologues |
Aca-Mir-19-P2a
Ami-Mir-19-P2a
Bta-Mir-19-P2a
Cfa-Mir-19-P2a
Cja-Mir-19-P2a
Cli-Mir-19-P2a
Cpi-Mir-19-P2a
Cpo-Mir-19-P2a
Dno-Mir-19-P2a
Dre-Mir-19-P2a1
Dre-Mir-19-P2a2
Eca-Mir-19-P2a
Ete-Mir-19-P2a
Gga-Mir-19-P2a
Gja-Mir-19-P2a
Gmo-Mir-19-P2a1
Gmo-Mir-19-P2a2
Hsa-Mir-19-P2a
Laf-Mir-19-P2a
Lch-Mir-19-P2a
Loc-Mir-19-P2a
Mal-Mir-19-P2a1
Mal-Mir-19-P2a2
Mdo-Mir-19-P2a
Mml-Mir-19-P2a
Mmr-Mir-19-P2a
Mmu-Mir-19-P2a
Mun-Mir-19-P2a
Oan-Mir-19-P2a5
Oan-Mir-19-P2a6
Ocu-Mir-19-P2a
Pab-Mir-19-P2a
Pbv-Mir-19-P2a
Rno-Mir-19-P2a
Sha-Mir-19-P2a
Spt-Mir-19-P2a
Sto-Mir-19-P2a
Tgu-Mir-19-P2a
Tni-Mir-19-P2a1
Tni-Mir-19-P2a2
Xla-Mir-19-P2a3
Xla-Mir-19-P2a4
Xtr-Mir-19-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635908.1: 307499-307558 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUAUUUGGUAGAUAAAAACUUCUCUAGUUAGUUUUGCAGGGUUGCAUCCAGCUGUUACAGAUUUGCUGUGCAAAUCCAUGCAAAACUGACUAUGGUGGUGAAGAUGCAACAGGUGUCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUAUUUGGUAGAUAAAA-- U C - -| UC UGUUA
ACU CU UAGUUAGUUUUGCA GGG UUGCA CAGC C
UGG GG AUCAGUCAAAACGU CCU AACGU GUCG A
AUCUGUGGACAACGUAGAAG U U A A^ -- UUUAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-19-P2a_5p* |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGGUUGCAUCCAGC -23
Get sequence
|
Mature sequence |
Cmi-Mir-19-P2a_3p |
mirBase accession | None |
Sequence |
37- UGUGCAAAUCCAUGCAAAACUGA -60
Get sequence
|