Mir-19-P2a

MirGeneDB ID

Sto-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-19-P1a-v1 Sto-Mir-19-P1a-v2 Sto-Mir-19-P1c Sto-Mir-19-P2b Sto-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005422.1: 25194-25255 [-]

Precursor
(pre-Mir +30nt flank)

AAAUUUUAACCAUGGAAAGCUUCUCUAGUUAGUUUUGCAGGUUUGCAUCCAGCUGUUAAUACAUAUUGCUGUGCAAAUCCAUGCAAAACUGACUAUAGAAGUAAAAUACAACUAGUGUUGAA

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Structure

        10          20        30         40         50        60
AAAUUUUAACCAUGGAAA--      C              -  -|     UC    UGUUAA 
                    GCUUCU UAGUUAGUUUUGCA GG UUUGCA  CAGC      U
                    UGAAGA AUCAGUCAAAACGU CC AAACGU  GUCG      A
AAGUUGUGAUCAACAUAAAA      U              A  U^     --    UUAUAC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Sto-Mir-19-P2a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

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Mature sequence

Sto-Mir-19-P2a_3p

mirBase accession

None

Sequence

39- UGUGCAAAUCCAUGCAAAACUGA -62

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