MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Sto-Mir-19-P1c  Sto-Mir-19-P2b  Sto-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005422.1: 25194-25255 [-]
Precursor
(pre-Mir +30nt flank)
AAAUUUUAACCAUGGAAAGCUUCUCUAGUUAGUUUUGCAGGUUUGCAUCCAGCUGUUAAUACAUAUUGCUGUGCAAAUCCAUGCAAAACUGACUAUAGAAGUAAAAUACAACUAGUGUUGAA
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Structure
        10          20        30         40         50        60
AAAUUUUAACCAUGGAAA--      C              -  -|     UC    UGUUAA 
                    GCUUCU UAGUUAGUUUUGCA GG UUUGCA  CAGC      U
                    UGAAGA AUCAGUCAAAACGU CC AAACGU  GUCG      A
AAGUUGUGAUCAACAUAAAA      U              A  U^     --    UUAUAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Sto-Mir-19-P2a_5p*
mirBase accessionNone
Sequence 
0- AGUUUUGCAGGUUUGCAUCCAGC -23
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Mature sequence

Sto-Mir-19-P2a_3p
mirBase accessionNone
Sequence 
39- UGUGCAAAUCCAUGCAAAACUGA -62
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