MirGeneDB ID | Laf-Mir-19-P2a |
Family name |
MIR-19 (all species) |
Seed |
GUGCAAA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-19-P1a
Laf-Mir-19-P2c
|
Orthologues |
Aca-Mir-19-P2a
Ami-Mir-19-P2a
Bta-Mir-19-P2a
Cfa-Mir-19-P2a
Cja-Mir-19-P2a
Cli-Mir-19-P2a
Cmi-Mir-19-P2a
Cpi-Mir-19-P2a
Cpo-Mir-19-P2a
Dno-Mir-19-P2a
Dre-Mir-19-P2a1
Dre-Mir-19-P2a2
Eca-Mir-19-P2a
Ete-Mir-19-P2a
Gga-Mir-19-P2a
Gja-Mir-19-P2a
Gmo-Mir-19-P2a1
Gmo-Mir-19-P2a2
Hsa-Mir-19-P2a
Lch-Mir-19-P2a
Loc-Mir-19-P2a
Mal-Mir-19-P2a1
Mal-Mir-19-P2a2
Mdo-Mir-19-P2a
Mml-Mir-19-P2a
Mmr-Mir-19-P2a
Mmu-Mir-19-P2a
Mun-Mir-19-P2a
Oan-Mir-19-P2a5
Oan-Mir-19-P2a6
Ocu-Mir-19-P2a
Pab-Mir-19-P2a
Pbv-Mir-19-P2a
Rno-Mir-19-P2a
Sha-Mir-19-P2a
Spt-Mir-19-P2a
Sto-Mir-19-P2a
Tgu-Mir-19-P2a
Tni-Mir-19-P2a1
Tni-Mir-19-P2a2
Xla-Mir-19-P2a3
Xla-Mir-19-P2a4
Xtr-Mir-19-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010038.1: 14396571-14396631 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUCCUAUUACUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUAGUGAAAAGUCUGUAGAAAAGUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCCUAUUACUGAACA----| UU - - UC UGUGUG
CUG CUAUGGUUAGUUUUGCA GG UUUGCA CAGC \
GAU GGUGUCAGUCAAAACGU CC AAACGU GUCG A
AUGAAAAGAUGUCUGAAAAGU^ -- A U -- UCUUAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Laf-Mir-19-P2a_5p* |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
|
Mature sequence |
Laf-Mir-19-P2a_3p |
mirBase accession | None |
Sequence |
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence
|