MirGeneDB ID | Laf-Mir-19-P2a |
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Family name | MIR-19 (all species) |
Seed | GUGCAAA |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-19-P1a Laf-Mir-19-P2c |
Orthologues | Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010038.1: 14396571-14396631 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGUCCUAUUACUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUAGUGAAAAGUCUGUAGAAAAGUAGet precursor sequence |
Structure | 10 20 30 40 50 UGUCCUAUUACUGAACA----| UU - - UC UGUGUG CUG CUAUGGUUAGUUUUGCA GG UUUGCA CAGC \ GAU GGUGUCAGUCAAAACGU CC AAACGU GUCG A AUGAAAAGAUGUCUGAAAAGU^ -- A U -- UCUUAU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UGUG in loop |
Star sequence | Laf-Mir-19-P2a_5p* |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGUUUGCAUCCAGC -23
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|
Mature sequence | Laf-Mir-19-P2a_3p |
mirBase accession | None |
Sequence |
38- UGUGCAAAUCCAUGCAAAACUGA -61
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|