MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-19-P1a  Loc-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG17: 12376619-12376681 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGCUUUAAUUUCCACUGGUCUCUGGUUAGUUUUGCUGGUUUGCAUUCAGCUGUAACACCACUGUUGCUGUGCAAAUCCAUGCAAAACUGACUAUAGCAGUGAAUAUCGUGAAAGUGUUGC
Get precursor sequence
Structure
        10            20        30         40         50        60 
UGUUGCUUUAAUUUCCA----|  GU  C             -   -      UU    UGUAACA 
                     CUG  CU UGGUUAGUUUUGC UGG UUUGCA  CAGC       \
                     GAC  GA AUCAGUCAAAACG ACC AAACGU  GUCG       C
CGUUGUGAAAGUGCUAUAAGU^  --  U             U   U      --    UUGUCAC 
 120       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-19-P2a_5p*
mirBase accessionNone
Sequence 
0- AGUUUUGCUGGUUUGCAUUCAGC -23
Get sequence
Mature sequence

Loc-Mir-19-P2a_3p
mirBase accessionNone
Sequence 
40- UGUGCAAAUCCAUGCAAAACUGA -63
Get sequence