Mir-19-P2a

MirGeneDB ID

Cpo-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-19b-1

Paralogues

Cpo-Mir-19-P1a Cpo-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_5: 32028817-32028877 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-92-P1a scaffold_5: 32028701-32028759 [-] UCSC
Mir-19-P2a scaffold_5: 32028817-32028877 [-] UCSC
Mir-17-P4a scaffold_5: 32028969-32029027 [-] UCSC
Mir-19-P1a scaffold_5: 32029133-32029190 [-] UCSC
Mir-17-P2a scaffold_5: 32029271-32029335 [-] UCSC
Mir-17-P1a scaffold_5: 32029418-32029477 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UGUCCUGUUAUUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGAAAAGUCUGUAGAAAAAGU

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Structure

        10        20          30         40         50          
UGUCCUGUUAUUGAACACUGUU--                 -  -|     UC    UGUGUG 
                        CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                        GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
UGAAAAAGAUGUCUGAAAAGUGGU                 A  U^     --    UCUUAU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-19-P2a_5p*

mirBase accession

MIMAT0046865

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

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Mature sequence

Cpo-Mir-19-P2a_3p

mirBase accession

MIMAT0046866

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

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