MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-19b
Paralogues Gga-Mir-19-P1a  Gga-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
1: 149439972-149440032 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGUUAAAUUGAACACUGUUCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUACUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGACAAGUCAGUCAGUAAAUG
Get precursor sequence
Structure
        10            20        30         40         50          
UGUUGUUAAAUUGAACA----|    CUC              -  -      UC    UGUAUG 
                     CUGUU   UGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GACGG   GUCAGUCAAAACGU CC AAACGU  GUCG      A
GUAAAUGACUGACUGAACAGU^    U--              A  U      --    UCUCAU 
 .       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-19-P2a_5p*

mirBase accessionMIMAT0026496
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
Proposed targets TargetScanVert: gga-miR-19b-5p
miRDB: MIMAT0026496
Mature sequence

Gga-Mir-19-P2a_3p

mirBase accessionMIMAT0001110
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence