Mir-17-P1a

MirGeneDB ID

Gga-Mir-17-P1a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-17

Paralogues

Gga-Mir-17-P1c Gga-Mir-17-P2a Gga-Mir-17-P2c Gga-Mir-17-P4a Gga-Mir-17-P4c

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

1: 149440570-149440630 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a)

Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUAAAAAAGCUGGUUGCGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAGCUGCCUCAGGAGAUCUU

Get precursor sequence

Structure

        10          20        30         40        50          
CUAAAAAAGCUGGUUGC--     A       CA-|       A  G     G   UGAUAU 
                   GUCAG GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGUU UAUUACG   UUCACGGA GU ACGUC AUC      A
UUCUAGAGGACUCCGUCGA     G       AUG^       A  G     -   CAAGAU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-17-P1a_5p

mirBase accession

MIMAT0001114

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-17-5p
miRDB: MIMAT0001114

Star sequence

Gga-Mir-17-P1a_3p*

mirBase accession

MIMAT0001115

Sequence

38- ACUGCAGUGAAGGCACUUGUAGC -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-17-3p
miRDB: MIMAT0001115