Mir-17-P2c

MirGeneDB ID

Gga-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-18b

Paralogues

Gga-Mir-17-P1a Gga-Mir-17-P1c Gga-Mir-17-P2a Gga-Mir-17-P4a Gga-Mir-17-P4c

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 3967813-3967877 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGGUGCUGCCCUACUCGUGGUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGACGUAGCGUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCUGCUGCCUGCACGCCAUCCCUCUG

Get precursor sequence

Structure

        10         20         30          40        50        60 
GCGGUGCUGCCCUACUC- UG  C-         --|  U    C   U     U  UGACGUA 
                  G  GU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                  C  CG  GAACACGGU  UCC CGUA AUC CGUCA UC       C
GUCUCCCUACCGCACGUC GU  UC         CU^  U    A   C     -  UAAGAUG 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-17-P2c_5p

mirBase accession

MIMAT0001141

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-18b-5p
miRDB: MIMAT0001141

Star sequence

Gga-Mir-17-P2c_3p*

mirBase accession

MIMAT0026516

Sequence

40- UACUGCCCUAAAUGCUCCUUCUGGC -65

Get sequence

Proposed targets

TargetScanVert: gga-miR-18b-3p
miRDB: MIMAT0026516