Mir-17-P2c

MirGeneDB ID

Sto-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-17-P1a Sto-Mir-17-P1b Sto-Mir-17-P1c Sto-Mir-17-P1d Sto-Mir-17-P2a Sto-Mir-17-P3b Sto-Mir-17-P4a Sto-Mir-17-P4b Sto-Mir-17-P4c

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01013767.1: 3215-3279 [+]

Precursor
(pre-Mir +30nt flank)

CCUGCAGUUUGUUAAUGUACCCCUUGUGUUUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGCUUAGAAUCUACUGCCCUAAGUGCUCCUUCUGGCACAGGAUGUAAACUAAACUUGGUUGUAACA

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Structure

        10           20        30         40        50        60 
CCUGCAGUUUGUUAAUG---   CC        U-|   U   UC   U     U  UGAUGUA 
                    UAC  CUUGUGUU  AAGG GCA  UAG GCAGU AG       G
                    AUG  GGACACGG  UUCC CGU  AUC CGUCA UC       C
ACAAUGUUGGUUCAAAUCAA   UA        UC^   U   GA   C     -  UAAGAUU 
   120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-17-P2c_5p

mirBase accession

None

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

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Co-mature sequence

Sto-Mir-17-P2c_3p

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

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