MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01013767.1: 3215-3279 [+]
Precursor
(pre-Mir +30nt flank)
CCUGCAGUUUGUUAAUGUACCCCUUGUGUUUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGCUUAGAAUCUACUGCCCUAAGUGCUCCUUCUGGCACAGGAUGUAAACUAAACUUGGUUGUAACA
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Structure
        10           20        30         40        50        60 
CCUGCAGUUUGUUAAUG---   CC        U-|   U   UC   U     U  UGAUGUA 
                    UAC  CUUGUGUU  AAGG GCA  UAG GCAGU AG       G
                    AUG  GGACACGG  UUCC CGU  AUC CGUCA UC       C
ACAAUGUUGGUUCAAAUCAA   UA        UC^   U   GA   C     -  UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Sto-Mir-17-P2c_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Co-mature sequence

Sto-Mir-17-P2c_3p

mirBase accessionNone
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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