Mir-17-P2c

MirGeneDB ID

Cfa-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-18b

Paralogues

Cfa-Mir-17-P1a Cfa-Mir-17-P1c Cfa-Mir-17-P1d Cfa-Mir-17-P2a Cfa-Mir-17-P4a Cfa-Mir-17-P4c Cfa-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chrX: 104896344-104896408 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c chrX: 104895658-104895722 [-] UCSC Ensembl
Mir-92-P1c chrX: 104895826-104895886 [-] UCSC Ensembl
Mir-19-P2c chrX: 104895961-104896026 [-] UCSC Ensembl
Mir-17-P4c chrX: 104896094-104896154 [-] UCSC Ensembl
Mir-17-P2c chrX: 104896344-104896408 [-] UCSC Ensembl
Mir-17-P1c chrX: 104896517-104896575 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUACCCUCCUCAUCACGUGUGACCUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCCGCUUAGAACCUACUGCCCUAAAUGCCCCUUCCGGCACAGGCUGCCUCGUGCUCAUCAUUAAACAG

Get precursor sequence

Structure

        10          20        30          40        50        60 
CCUACCCUCCUCAUCACGU--  GA        --|   U    C   U     UA UGAAGCC 
                     GU  CCUGUGUU  AAGG GCAU UAG GCAGU  G       \
                     CG  GGACACGG  UUCC CGUA AUC CGUCA  C       G
GACAAAUUACUACUCGUGCUC  UC        CC^   C    A   C     UC AAGAUUC 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-17-P2c_5p

mirBase accession

MIMAT0009831

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-18b
miRDB: MIMAT0009831

Star sequence

Cfa-Mir-17-P2c_3p*

mirBase accession

None

Sequence

40- UACUGCCCUAAAUGCCCCUUCCGGC -65

Get sequence