Mir-17-P4a

MirGeneDB ID

Cfa-Mir-17-P4a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-20a

Paralogues

Cfa-Mir-17-P1a Cfa-Mir-17-P1c Cfa-Mir-17-P1d Cfa-Mir-17-P2a Cfa-Mir-17-P2c Cfa-Mir-17-P4c Cfa-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr22: 42478462-42478520 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-17-P1a chr22: 42478013-42478072 [+] UCSC Ensembl
Mir-17-P2a chr22: 42478151-42478215 [+] UCSC Ensembl
Mir-19-P1a chr22: 42478298-42478355 [+] UCSC Ensembl
Mir-17-P4a chr22: 42478462-42478520 [+] UCSC Ensembl
Mir-19-P2a chr22: 42478597-42478657 [+] UCSC Ensembl
Mir-92-P1a chr22: 42478714-42478772 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUCUCUGACGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUCGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGGCC

Get precursor sequence

Structure

        10            20        30         40        50         
GUGUCUCUGACGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     C
CCGGCUUCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-17-P4a_5p

mirBase accession

MIMAT0006651

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-20a
miRDB: MIMAT0006651

Star sequence

Cfa-Mir-17-P4a_3p*

mirBase accession

None

Sequence

36- ACUGCAUUAUGAGCACUUAAAGU -59

Get sequence