Mir-17-P4a8

MirGeneDB ID

Oan-Mir-17-P4a8

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-20a-1

Paralogues

Oan-Mir-17-P1a Oan-Mir-17-P1c Oan-Mir-17-P2a Oan-Mir-17-P2c Oan-Mir-17-P4a7 Oan-Mir-17-P4c

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Xtr-Mir-17-P4a

Node of Origin (locus)

O. anatinus

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041737.1: 29148077-29148135 [-]

Precursor
(pre-Mir +30nt flank)

GGCUCGCAGAUCAAACAGUUCUUGUAGCACUAAAGUGCUUAUAGUGCAGGCAAUGUUUAGUCGUCUACUGCAUUAUGAGCACUUCAAGUCCUGCAAGCUGUAGAACUACAACUUCAGUA

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Structure

        10        20          30         40        50        
GGCUCGCAGAUCAAACAGUU--       C   A-|                GCAAUGUU 
                      CUUGUAG ACU  AAGUGCUUAUAGUGCAG        U
                      GAACGUC UGA  UUCACGAGUAUUACGUC        A
AUGACUUCAACAUCAAGAUGUC       C   AC^                AUCUGCUG 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-17-P4a8_5p

mirBase accession

MIMAT0007145

Sequence

0- UAAAGUGCUUAUAGUGCAGGCA -22

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Star sequence

Oan-Mir-17-P4a8_3p*

mirBase accession

MIMAT0007146

Sequence

36- ACUGCAUUAUGAGCACUUCAAGU -59

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