MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-106
Paralogues Oan-Mir-17-P1a  Oan-Mir-17-P2a  Oan-Mir-17-P2c  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Oan-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041733.1: 24650384-24650441 [-]
Clustered miRNAs
(< 50kb from Mir-17-P1c)
Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]
Precursor
(pre-Mir +30nt flank)
AACUUGGUGUUGGAUAGGCCUUGGUUGUGCAAAAGUGCUUACAGUGCAGGUAGCUUUUAGUACCUACUGCAAUGUAAGCACUUCUAGCAUUACCAUGGCAAUUCAAUCAAUGAGUGCU
Get precursor sequence
Structure
        10          20        30         40        50        
AACUUGGUGUUGGAUAG--   U    U    AA-|          G     G   CUUU 
                   GCC UGGU GUGC   AAGUGCUUACA UGCAG UAG    U
                   CGG ACCA UACG   UUCACGAAUGU ACGUC AUC    A
UCGUGAGUAACUAACUUAA   U    U    AUC^          A     -   CAUG 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-17-P1c_5p

mirBase accessionMIMAT0006849
Sequence
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Oan-Mir-17-P1c_3p*

mirBase accessionMIMAT0006850
Sequence
35- ACUGCAAUGUAAGCACUUCUAGC -58
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