Mir-17-P1c

MirGeneDB ID

Eca-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-106a

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4a Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCGCUGCAGGAAUAGGCCUUGGCCAUGUCAAAGUGCUUACAGUGCAGGUAGCUUUCUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCCACGGCUCCU

Get precursor sequence

Structure

        10          20        30         40        50         
UUUCGCUGCAGGAAUAG--   U   CC    CA-|       A  G     G   CUUUC 
                   GCC UGG  AUGU   AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACA   UUCACGAA GU ACGUC AUC     U
UCCUCGGCACCUAAUUUAG   U   AU    UUC^       C  A     -   UAGAG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-17-P1c_5p

mirBase accession

MIMAT0013194

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Star sequence

Eca-Mir-17-P1c_3p* (predicted)

mirBase accession

None

Sequence

36- ACUGCAAUGCAAGCACUUCUUAC -59

Get sequence