Mir-17-P1c

MirGeneDB ID

Hsa-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-106a

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1d Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4c Hsa-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chrX: 134170208-134170266 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUGCUACAGGAAUAGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUGAGAUCUACUGCAAUGUAAGCACUUCUUACAUUACCAUGGUGAUUUAGUCAAUGGCUACU

Get precursor sequence

Structure

        10          20        30         40        50         
UUUUGCUACAGGAAUAG--   U   CC      -|          G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCUUACA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGAAUGU ACGUC AUC     U
UCAUCGGUAACUGAUUUAG   U   AU      C^          A     -   UAGAG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-17-P1c_5p

mirBase accession

MIMAT0000103

Sequence

0- AAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000103
TargetScanVert: hsa-miR-106a-5p
TargetMiner: hsa-miR-106a-5p
miRDB: MIMAT0000103

Star sequence

Hsa-Mir-17-P1c_3p*

mirBase accession

MIMAT0004517

Sequence

36- ACUGCAAUGUAAGCACUUCUUAC -59

Get sequence

Proposed targets

microrna.org: MIMAT0004517
TargetScanVert: hsa-miR-106a-3p
TargetMiner: hsa-miR-106a-3p
miRDB: MIMAT0004517