MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-17-P1a  Ami-Mir-17-P1d  Ami-Mir-17-P2a  Ami-Mir-17-P2c  Ami-Mir-17-P4a  Ami-Mir-17-P4c  Ami-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711293.1: 2600367-2600425 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCUUUCUGGUGGAUGGGCCUUGUGUUGUGUAAAAGUGCUUACAGUGCAGGUAGUGUUUUGGUAUCUACUGCAGUAUAAGCACUUCUAGCAUUACCAUGGCAAUUCAAUCAGUGAUUUGU
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Structure
        10           20        30         40        50         
UCUUUCUGGUGGAUGGG---| U  U  U    AA-         CAG     G   UGUUU 
                    CC UG GU GUGU   AAGUGCUUA   UGCAG UAG     \
                    GG AC CA UACG   UUCACGAAU   ACGUC AUC     U
UGUUUAGUGACUAACUUAAC^ U  -  U    AUC         AUG     -   UAUGG 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Ami-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
36- ACUGCAGUAUAAGCACUUCUAGC -59
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