MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P2a  Gja-Mir-17-P2c  Gja-Mir-17-P4a  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
Precursor
(pre-Mir +30nt flank)
AAAAGUGCUUAUAGUGCAGGUAGCAUAUUGGCACCUACUGCAGUAUUGGCACUUCAGC
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Structure
          10           20       
AA--       U   G   ---|   A  AU 
    AAGUGCU AUA UGC   AGGU GC  A
    UUCACGG UAU ACG   UCCA CG  U
CGAC       U   G   UCA^   -  GU 
       50        40         30
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Gja-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Gja-Mir-17-P1c_3p* (predicted)
mirBase accessionNone
Sequence 
36- ACUGCAGUAUUGGCACUUCAGC -58
Get sequence