MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-106a
Paralogues Cfa-Mir-17-P1a  Cfa-Mir-17-P1d  Cfa-Mir-17-P2a  Cfa-Mir-17-P2c  Cfa-Mir-17-P4a  Cfa-Mir-17-P4c  Cfa-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chrX: 104896517-104896575 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c chrX: 104895658-104895722 [-] UCSC Ensembl
Mir-92-P1c chrX: 104895826-104895886 [-] UCSC Ensembl
Mir-19-P2c chrX: 104895961-104896026 [-] UCSC Ensembl
Mir-17-P4c chrX: 104896094-104896154 [-] UCSC Ensembl
Mir-17-P2c chrX: 104896344-104896408 [-] UCSC Ensembl
Mir-17-P1c chrX: 104896517-104896575 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUGCUCCAAGAGUGGGCCUUGGCCGUGUAAAAGUGCUUACAGUGCAGGUAGCAUUCUGCGAUCUACUGCAAUGCAAGCACUUCUUACAUUACUGGGGCGAUGGGAUCGGACGCCAAG
Get precursor sequence
Structure
        10          20        30         40        50         
UCAUGCUCCAAGAGUGG--    UG CC      -|       A  G     G   CAUUC 
                   GCCU  G  GUGUAA AAGUGCUU CA UGCAG UAG     \
                   CGGG  C  UACAUU UUCACGAA GU ACGUC AUC     U
GAACCGCAGGCUAGGGUAG    GU AU      C^       C  A     -   UAGCG 
       110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-17-P1c_5p
mirBase accessionMIMAT0006749
Sequence 
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Proposed targets TargetScanVert: cfa-miR-106a
miRDB: MIMAT0006749
Star sequence

Cfa-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
36- ACUGCAAUGCAAGCACUUCUUAC -59
Get sequence