MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-17-P1a  Cja-Mir-17-P1d  Cja-Mir-17-P2a  Cja-Mir-17-P2c  Cja-Mir-17-P4a  Cja-Mir-17-P4c  Cja-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125647173-125647231 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGCUACAGGAAUAGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAAUGGCUACU
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Structure
        10          20        30         40        50         
UUUUGCUACAGGAAUAG--   U   CC      -|       A  G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGAA GU ACGUC AUC     U
UCAUCGGUAACUAAUUUAG   U   AU      C^       C  A     -   UAGAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cja-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Cja-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
36- ACUGCAAUGCAAGCACUUCUUAC -59
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