MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P1c3

Family name MIR-17 (all species)
Seed CUGCACA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-106
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xtr-Mir-17-P1c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c3)		 Mir-92-P2c3 NC_030738.1: 47238172-47238237 [-] UCSC Ensembl
Mir-92-P1c3 NC_030738.1: 47238303-47238364 [-] UCSC Ensembl
Mir-19-P2c3 NC_030738.1: 47238435-47238491 [-] UCSC Ensembl
Mir-17-P4c3 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Mir-17-P2c3 NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Mir-17-P1c3 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAUGUGCUGUGACCUGUCUGGGUUGUGCAAAAGUGCUUAUAGUGCAGGUAGAACUUAGACCUACUGCACAGUAAGCACUUCCUGCAUCAUCAAGGCACAUGCAUCUCCCUCUGCU
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Structure
        10          20        30         40        50        
UUAAUGUGCUGUGACCU--    G   U     A-|         A      G   AACU 
                   GUCU GGU GUGCA  AAGUGCUUAU GUGCAG UAG    \
                   CGGA CUA UACGU  UUCACGAAUG CACGUC AUC    U
UCGUCUCCCUCUACGUACA    A   C     CC^         A      -   CAGA 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-17-P1c3_5p*
mirBase accessionMIMAT0046418
Sequence 
0- AAAAGUGCUUAUAGUGCAGGUAG -23
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Mature sequence

Xla-Mir-17-P1c3_3p
mirBase accessionMIMAT0046419
Sequence 
34- ACUGCACAGUAAGCACUUCCUGC -57
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