MirGeneDB ID | Loc-Mir-17-P1c |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-17-P1a
Loc-Mir-17-P1d
Loc-Mir-17-P2a
Loc-Mir-17-P2c
Loc-Mir-17-P4a
Loc-Mir-17-P4c
Loc-Mir-17-P4d
|
Orthologues |
Aca-Mir-17-P1c
Ami-Mir-17-P1c
Bta-Mir-17-P1c
Cfa-Mir-17-P1c
Cja-Mir-17-P1c
Cli-Mir-17-P1c
Cmi-Mir-17-P1c
Cpi-Mir-17-P1c
Cpo-Mir-17-P1c
Dno-Mir-17-P1c
Eca-Mir-17-P1c
Ete-Mir-17-P1c
Gga-Mir-17-P1c
Gja-Mir-17-P1c
Hsa-Mir-17-P1c
Laf-Mir-17-P1c
Lch-Mir-17-P1c
Mdo-Mir-17-P1c
Mml-Mir-17-P1c
Mmr-Mir-17-P1c
Mmu-Mir-17-P1c
Mun-Mir-17-P1c
Neu-Mir-17-P1c
Oan-Mir-17-P1c
Ocu-Mir-17-P1c
Pab-Mir-17-P1c
Pbv-Mir-17-P1c
Rno-Mir-17-P1c
Sha-Mir-17-P1c
Spt-Mir-17-P1c
Sto-Mir-17-P1c
Tgu-Mir-17-P1c
Xla-Mir-17-P1c3
Xla-Mir-17-P1c4
Xtr-Mir-17-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG7: 45791277-45791334 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUGGGGCGCGCAGGGCUCAUUGUCGUGCAAAAGUGCUUACAGUGCAGGUAGCCUACACACUCUACUGCAAUGCAAGCACUUCUUGCAUUACCGUGCGGAUUGCUGGCCUGGUUGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUGGGGCGCGCAGGG- - U C -| A G G CCUA
CU CAU GU GUGCAA AAGUGCUU CA UGCAG UAG C
GG GUG CA UACGUU UUCACGAA GU ACGUC AUC A
UCGUUGGUCCGGUCGUUA C C U C^ C A - UCAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-17-P1c_5p |
mirBase accession | None |
Sequence |
0- AAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Loc-Mir-17-P1c_3p* |
mirBase accession | None |
Sequence |
35- ACUGCAAUGCAAGCACUUCUUGC -58
Get sequence
|