MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01013767.1: 3033-3091 [+]
Precursor
(pre-Mir +30nt flank)
GUCCUGUGCUGGAUUUGGCCAGAGUUGUGCAAAAGUGCUCACAAGUGCAGGUAGCAGGGUGCAUCUACUGCACUGUGGGCACUUCUUGCAUUACCUUGGUAGAUAUGUUUAACUGCAAU
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Structure
        10          20        30         40        50         
GUCCUGUGCUGGAUUUG--     A  U      -|          A      G   CAGG 
                   GCCAG GU GUGCAA AAGUGCUCACA GUGCAG UAG    G
                   UGGUU CA UACGUU UUCACGGGUGU CACGUC AUC    U
UAACGUCAAUUUGUAUAGA     C  U      C^          -      -   UACG 
       110       100        90        80         70         60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P1c_5p (predicted)
mirBase accessionNone
Sequence 
0- AAAAGUGCUCACAAGUGCAGGUAG -24
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Star sequence

Sto-Mir-17-P1c_3p* (predicted)
mirBase accessionNone
Sequence 
36- ACUGCACUGUGGGCACUUCUUGC -59
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