MirGeneDB ID | Sto-Mir-17-P1b |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-17-P1a
Sto-Mir-17-P1c
Sto-Mir-17-P1d
Sto-Mir-17-P2a
Sto-Mir-17-P2c
Sto-Mir-17-P3b
Sto-Mir-17-P4a
Sto-Mir-17-P4b
Sto-Mir-17-P4c
|
Orthologues |
Cmi-Mir-17-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01001891.1: 342587-342646 [+]
|
Precursor (pre-Mir +30nt flank) |
CUAUUGUGCGGCCAUCUGUCCGAGUAGUGCCAAAGUGCUGACAGUGCAGGUAGUGAUGAGGCCUUCUACUGCAGUGUAAGCACUUAACGUACUCCUUGUGUACACCAUCUUCCCUGAAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUAUUGUGCGGCCAUCUGUC-- U CA-| G G G UGAUG
CGAG AGUGC AAGUGCU ACA UGCAG UAG A
GUUC UCAUG UUCACGA UGU ACGUC AUC G
CGAAGUCCCUUCUACCACAUGU C CAA^ A G - UUCCG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-17-P1b_5p |
mirBase accession | None |
Sequence |
0- CAAAGUGCUGACAGUGCAGGUAG -23
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|
Star sequence |
Sto-Mir-17-P1b_3p* |
mirBase accession | None |
Sequence |
37- ACUGCAGUGUAAGCACUUAACGU -60
Get sequence
|