MirGeneDB ID | Cmi-Mir-17-P1b |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-17-P1a
Cmi-Mir-17-P1c
Cmi-Mir-17-P1d
Cmi-Mir-17-P2a
Cmi-Mir-17-P2c
Cmi-Mir-17-P3b
Cmi-Mir-17-P4a
Cmi-Mir-17-P4b
Cmi-Mir-17-P4c
Cmi-Mir-17-P4d
|
Orthologues |
Sto-Mir-17-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635855.1: 9354316-9354375 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCGUGGAAUAGCACCUGUCCGAGUAGUGCCAAAGUGCUGACAGUGCAGGUAGUGAUGGGACCUUCUACUGCAGUGUAAGCACUUCCUGUUCUCCUCGUACAAACCAUCUUCCCUGAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCGUGGAAUAGCACCU-- C U U CA-| G G G UGAUG
GU CGAG AG GC AAGUGCU ACA UGCAG UAG G
CA GCUC UC UG UUCACGA UGU ACGUC AUC G
AGAAGUCCCUUCUACCAAA U C U UCC^ A G - UUCCA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-17-P1b_5p |
mirBase accession | None |
Sequence |
0- CAAAGUGCUGACAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Cmi-Mir-17-P1b_3p* |
mirBase accession | None |
Sequence |
37- ACUGCAGUGUAAGCACUUCCUGU -60
Get sequence
|