MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-17-P1b

Family name MIR-17 (all species)
Seed AAAGUGC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Sto-Mir-17-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635855.1: 9354316-9354375 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGUGGAAUAGCACCUGUCCGAGUAGUGCCAAAGUGCUGACAGUGCAGGUAGUGAUGGGACCUUCUACUGCAGUGUAAGCACUUCCUGUUCUCCUCGUACAAACCAUCUUCCCUGAAGA
Get precursor sequence
Structure
        10          20        30         40        50         
UCCGUGGAAUAGCACCU--  C    U  U  CA-|      G   G     G   UGAUG 
                   GU CGAG AG GC   AAGUGCU ACA UGCAG UAG     G
                   CA GCUC UC UG   UUCACGA UGU ACGUC AUC     G
AGAAGUCCCUUCUACCAAA  U    C  U  UCC^      A   G     -   UUCCA 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P1b_5p

mirBase accessionNone
Sequence
0- CAAAGUGCUGACAGUGCAGGUAG -23
Get sequence
Star sequence

Cmi-Mir-17-P1b_3p*

mirBase accessionNone
Sequence
37- ACUGCAGUGUAAGCACUUCCUGU -60
Get sequence