MirGeneDB ID | Cmi-Mir-17-P4b |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-17-P1a
Cmi-Mir-17-P1b
Cmi-Mir-17-P1c
Cmi-Mir-17-P1d
Cmi-Mir-17-P2a
Cmi-Mir-17-P2c
Cmi-Mir-17-P3b
Cmi-Mir-17-P4a
Cmi-Mir-17-P4c
Cmi-Mir-17-P4d
|
Orthologues |
Sto-Mir-17-P4b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635855.1: 9358118-9358178 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCCAAUGGUGGAUUGUGUCUGAGCAGUCCAAAAGUGCUUGUAGUGCAGGUAGUUGGCAUUGAUUCCUACUGCAGAACAAUCACUUUCAGAGCUGCUUAUGACCCGAGCGCCUUGAGAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCAAUGGUGGAUUGU- - -| CA C AG G UUGGCA
GUC UGAGCAG UC AAAGUG UUGU UGCAG UAG \
CAG AUUCGUC AG UUUCAC AACA ACGUC AUC U
UGAAGAGUUCCGCGAGCC U G^ AC U AG - CUUAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cmi-Mir-17-P4b_5p |
mirBase accession | None |
Sequence |
0- AAAAGUGCUUGUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Cmi-Mir-17-P4b_3p* |
mirBase accession | None |
Sequence |
38- ACUGCAGAACAAUCACUUUCAGA -61
Get sequence
|