MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI637193.1: 1684-1744 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUCAGAGACUGAUGGGUCUCGGAGCUCCAAAGUGCUGUUAGUGCAGGUAGUGUGUGUUUGAAUCUACUGCAUUAGAAGCACUUCUGAAGCUACGGGGCCUCAAGCAACAGCUCACUGA
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Structure
        10          20        30         40        50          
GUUUUCAGAGACUGAUG--       G    C  -|      G         G   UGUGUG 
                   GGUCUCG AGCU CA AAGUGCU UUAGUGCAG UAG      \
                   CCGGGGC UCGA GU UUCACGA GAUUACGUC AUC      U
AGUCACUCGACAACGAACU       A    A  C^      A         -   UAAGUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P4d_5p

mirBase accessionNone
Sequence
0- CAAAGUGCUGUUAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P4d_3p*

mirBase accessionNone
Sequence
38- ACUGCAUUAGAAGCACUUCUGAA -61
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