MirGeneDB ID | Cmi-Mir-17-P4d |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-17-P1a
Cmi-Mir-17-P1b
Cmi-Mir-17-P1c
Cmi-Mir-17-P1d
Cmi-Mir-17-P2a
Cmi-Mir-17-P2c
Cmi-Mir-17-P3b
Cmi-Mir-17-P4a
Cmi-Mir-17-P4b
Cmi-Mir-17-P4c
|
Orthologues |
Ami-Mir-17-P4d
Bta-Mir-17-P4d
Cfa-Mir-17-P4d
Cja-Mir-17-P4d
Cpi-Mir-17-P4d
Cpo-Mir-17-P4d
Dno-Mir-17-P4d
Dre-Mir-17-P4d
Eca-Mir-17-P4d
Ete-Mir-17-P4d
Gmo-Mir-17-P4d
Hsa-Mir-17-P4d
Laf-Mir-17-P4d
Lch-Mir-17-P4d
Loc-Mir-17-P4d
Mal-Mir-17-P4d
Mdo-Mir-17-P4d
Mml-Mir-17-P4d
Mmr-Mir-17-P4d
Mmu-Mir-17-P4d
Mun-Mir-17-P4d
Ocu-Mir-17-P4d
Pab-Mir-17-P4d
Rno-Mir-17-P4d
Sha-Mir-17-P4d
Tni-Mir-17-P4d
Xla-Mir-17-P4d3
Xla-Mir-17-P4d4
Xtr-Mir-17-P4d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI637193.1: 1684-1744 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUUUCAGAGACUGAUGGGUCUCGGAGCUCCAAAGUGCUGUUAGUGCAGGUAGUGUGUGUUUGAAUCUACUGCAUUAGAAGCACUUCUGAAGCUACGGGGCCUCAAGCAACAGCUCACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUUUCAGAGACUGAUG-- G C -| G G UGUGUG
GGUCUCG AGCU CA AAGUGCU UUAGUGCAG UAG \
CCGGGGC UCGA GU UUCACGA GAUUACGUC AUC U
AGUCACUCGACAACGAACU A A C^ A - UAAGUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-17-P4d_5p |
mirBase accession | None |
Sequence |
0- CAAAGUGCUGUUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Cmi-Mir-17-P4d_3p* |
mirBase accession | None |
Sequence |
38- ACUGCAUUAGAAGCACUUCUGAA -61
Get sequence
|