MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-17-P1a  Laf-Mir-17-P1c  Laf-Mir-17-P1d  Laf-Mir-17-P2a  Laf-Mir-17-P2c  Laf-Mir-17-P4a  Laf-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010179.1: 713427-713488 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCAUCUUGGACCUUAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCUGGGACACAACCUCUCCGCCAGCCG
Get precursor sequence
Structure
        10          20        30          40        50        60
UCCCAUCUUGGACCUUA--    UG       CA-       -|    U    G   UGUGAU 
                   GUCC  GGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGG  CCCCGAG   UUCACGA CGAGU CGUC AUC      A
GCCGACCGCCUCUCCAACA    GU       CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
Star sequence

Laf-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
Get sequence