| MirGeneDB ID | Laf-Mir-17-P4d |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAAGUGC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-17-P1a Laf-Mir-17-P1c Laf-Mir-17-P1d Laf-Mir-17-P2a Laf-Mir-17-P2c Laf-Mir-17-P4a Laf-Mir-17-P4c |
| Orthologues | Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010179.1: 713427-713488 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCCAUCUUGGACCUUAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCUGGGACACAACCUCUCCGCCAGCCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCCCAUCUUGGACCUUA-- UG CA- -| U G UGUGAU GUCC GGGGCUC AAGUGCU GUUCG GCAG UAG U CAGG CCCCGAG UUCACGA CGAGU CGUC AUC A GCCGACCGCCUCUCCAACA GU CCC U^ - - CAGUCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-17-P4d_5p |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
|
| Star sequence | Laf-Mir-17-P4d_3p* |
| mirBase accession | None |
| Sequence |
39- ACUGCUGAGCUAGCACUUCCCGA -62
Get sequence
|
