MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-17-P2c

Family name MIR-17 (all species)
Seed CUGCCCU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-17-P1a  Laf-Mir-17-P1c  Laf-Mir-17-P1d  Laf-Mir-17-P2a  Laf-Mir-17-P4a  Laf-Mir-17-P4c  Laf-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010127.1: 4184272-4184332 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCCAUUCCUUCCAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAAGCAGCUUAGAACCUACUGCCCUAAGUGCUCCUUCUGGCACAGGCUGCCUAAUACACAGCGUUUAAAAA
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Structure
        10          20        30          40        50         
GAGCCAUUCCUUCCAAUGU--  CU         --|  U   UC   U     UAAGCAGC 
                     GU  CUUGUGUUA  AGG GCA  UAG GCAGU        \
                     CG  GGACACGGU  UCC CGU  AUC CGUCA        U
AAAAAUUUGCGACACAUAAUC  UC         CU^  U   GA   C     UCCAAGAU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-17-P2c_5p* (predicted)
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUA -22
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Mature sequence

Laf-Mir-17-P2c_3p
mirBase accessionNone
Sequence 
37- ACUGCCCUAAGUGCUCCUUCUGGC -61
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