| MirGeneDB ID | Laf-Mir-17-P2c |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | CUGCCCU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-17-P1a Laf-Mir-17-P1c Laf-Mir-17-P1d Laf-Mir-17-P2a Laf-Mir-17-P4a Laf-Mir-17-P4c Laf-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010127.1: 4184272-4184332 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGCCAUUCCUUCCAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAAGCAGCUUAGAACCUACUGCCCUAAGUGCUCCUUCUGGCACAGGCUGCCUAAUACACAGCGUUUAAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 GAGCCAUUCCUUCCAAUGU-- CU --| U UC U UAAGCAGC GU CUUGUGUUA AGG GCA UAG GCAGU \ CG GGACACGGU UCC CGU AUC CGUCA U AAAAAUUUGCGACACAUAAUC UC CU^ U GA C UCCAAGAU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Laf-Mir-17-P2c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGUGCAGUUA -22
Get sequence
|
| Mature sequence | Laf-Mir-17-P2c_3p |
| mirBase accession | None |
| Sequence |
37- ACUGCCCUAAGUGCUCCUUCUGGC -61
Get sequence
|
