MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID
Paralogues Rno-Mir-17-P1a  Rno-Mir-17-P1c  Rno-Mir-17-P1d  Rno-Mir-17-P2a  Rno-Mir-17-P4a  Rno-Mir-17-P4c  Rno-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chrX: 140117734-140117798 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUGCUCCUUGUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCUGUUAGUGAAGCAGCUUAUAAUCUACUGCCCUAAAUGCCCCUUCUCGCACAGGCUACUGCUUACUCCGCAUUUGAAAA
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Structure
        10          20        30          40        50        60 
GAGCUGCUCCUUGUAAU-  -  CU       U--|   U    C   U  U  U  UGAAGCA 
                  GU GU  CUUGUGU   AAGG GCAU UAG GC GU AG       G
                  CG CA  GGACACG   UUCC CGUA AUC CG CA UC       C
AAAAGUUUACGCCUCAUU  U  UC       CUC^   C    A   C  U  -  UAAUAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-17-P2c_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCUGUUAG -23
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Star sequence

Rno-Mir-17-P2c_3p*

mirBase accessionNone
Sequence
40- UACUGCCCUAAAUGCCCCUUCUCGC -65
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